All functions, methods and classes listed on this page are deprecated and might be removed in future releases.
GeneidFilter creates a GeneIdFilter. Use
GeneIdFilter from the AnnotationFilter package instead.
GenebiotypeFilter creates a GeneBiotypeFilter. Use
GeneBiotypeFilter from the AnnotationFilter package instead.
EntrezidFilter creates a EntrezFilter. Use
EntrezFilter from the AnnotationFilter package instead.
TxidFilter creates a TxIdFilter. Use
TxIdFilter from the AnnotationFilter package instead.
TxbiotypeFilter creates a TxBiotypeFilter. Use
TxBiotypeFilter from the AnnotationFilter package instead.
ExonidFilter creates a ExonIdFilter. Use
ExonIdFilter from the AnnotationFilter package instead.
ExonrankFilter creates a ExonRankFilter. Use
ExonRankFilter from the AnnotationFilter package instead.
SeqNameFilter creates a SeqNameFilter. Use
SeqNameFilter from the AnnotationFilter package instead.
SeqstrandFilter creates a SeqStrandFilter. Use
SeqStrandFilter from the AnnotationFilter instead.
SeqstartFilter creates a GeneStartFilter, TxStartFilter
or ExonStartFilter depending on the value of the parameter
feature. Use GeneStartFilter, TxStartFilter and
ExonStartFilter instead.
SeqendFilter creates a GeneEndFilter, TxEndFilter
or ExonEndFilter depending on the value of the parameter
feature. Use GeneEndFilter, TxEndFilter and
ExonEndFilter instead.
GeneidFilter(value, condition = "==")
GenebiotypeFilter(value, condition = "==")
EntrezidFilter(value, condition = "==")
TxidFilter(value, condition = "==")
TxbiotypeFilter(value, condition = "==")
ExonidFilter(value, condition = "==")
ExonrankFilter(value, condition = "==")
SeqnameFilter(value, condition = "==")
SeqstrandFilter(value, condition = "==")
SeqstartFilter(value, condition = ">", feature = "gene")
SeqendFilter(value, condition = "<", feature = "gene")The value for the filter.
The condition for the filter.
For SeqstartFilter and SeqendFilter: on what type
of feature should the filter be applied? Supported are "gene",
"tx" and "exon".